Protein Coverage Summarizer
The Protein Coverage Summarizer can be used to determine the percent of the residues in each protein sequence that have been identified. The program requires two input files: the first should contain the protein names and protein sequences (optionally with protein description) while the second should contain the peptide sequences and optionally also contain the protein name associated with each peptide sequence. A graphical user interface (GUI) is provided to allow the user to select the input files, set the options, and browse the coverage results. The results browser displays the protein sequences, highlighting the residues that were present in the peptide input file, and providing sequence coverage stats for each protein.
| Download Software Tool | Download Source Code |
| Version | v1.2.2805 | Requirements | Microsoft NET Framework 1.1 |
| Date Updated | September 6, 2007 | File Size (Software Tool) | 243 KB (ZIP) |
| Registration Required | No | File size (Source Code) | 405 KB |
| Developers | Matthew Monroe; Niksa Blonder | ||
| Comments | Version 1.2 includes a new algorithm that drastically increases the speed with
which peptides are compared to protein sequences See also the complete Revision History |
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Acknowledgment
All publications that result from the use of this software should include this statement:
Portions of this research were supported by the NIH National Center for Research Resources (Grant RR018522), and the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at PNNL). PNNL is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RL0 1830.
