Protein Digestion Simulator Basic
The Protein Digestion Simulator Basic can be used to read a text file containing protein or peptide sequences (FASTA format or delimited text) then output the data to a tab-delimited file. It can optionally digest the input sequences using trypsin or partial trypsin rules, and can add the predicted normalized elution time (NET) values for the peptides. It can also validate a FASTA file, testing it against a set of rules that identify common formatting errors. Lastly, the program can calculate the number of uniquely identifiable peptides within an input file using only mass, or both mass and NET, given user-defined tolerances.
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